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brielin / Popcorn

Software for estimating correlation of trait effect sizes across populations
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ValueError: Input must be 1- or 2-d. #18

Closed zhangchuyi closed 3 years ago

zhangchuyi commented 3 years ago

Dear Popcorn group,

Thanks for the fantastic software. I haved struggled in some problems for several days. I would appreciate it if you could give me any advice.

I tried command like this: python __main__.py fit -v 1 --cfile ~/path/to/EUR_EAS_all_gen_imp.cscore --sfile1 ~/path/to/xx_eas_popcorn.txt --sfile2 ~/path/to/xx_eur_popcorn.txt correlation.txt Then I got following error :

Initial estimate: Val (obs) SE h1^2 0.660572 NaN h2^2 0.094676 NaN pg 0.176789 NaN Performing jackknife estimation of the standard error using [(0, 10909), (10909, 21819), (21819, 32728), (32728, 43638), (43638, 54547), (54547, 65457), (65457, 76367), (76367, 87276), (87276, 98186), (98186, 109095), (109095, 120005),......,(2171009, 2181919)] blocks of size 10909 . ... File "/home/lilab/zhangchuyi/anaconda3/envs/popcorn/lib/python3.8/site-packages/numpy/lib/twodim_base.py", line 283, in diag raise ValueError("Input must be 1- or 2-d.") ValueError: Input must be 1- or 2-d.

I have no idea what the error input is because my programming skills are to poor to understand most part of your python files.

Thanks in advance, Chuyi Zhang

brielin commented 3 years ago

Unfortunately I have not been able to port this to Python 3 so only 2.7 is supported.