smuchakiel
commented
2 years ago I tried this also with the "test_dataset" EUR_test.txt, same error.
Open smuchakiel opened 2 years ago
smuchakiel
commented
2 years ago I tried this also with the "test_dataset" EUR_test.txt, same error.
Hi, I want to check two diseases on heritability and genetic correlation.
################################## Here is an example with my input datasets: ##################################
dataset1 SNP A1 A2 N beta SE P OR Z AF 1:61743 C G 538622 0.1163 0.0841 0.1664 1.12333 1.472 0.9981 dataset2 SNP A1 A2 N beta SE P OR Z AF 1:10352 T TA 106645 0.0327963 0.013999999999999999 0.019151.03334 -0.160 0.575901
#################### Sadly I received this error. ####################
Traceback (most recent call last): File "/home/mucha/POPCORN/popcorn/main.py", line 248, in
main()
File "/home/mucha/POPCORN/popcorn/main.py", line 208, in main
data = sumstats.sumstats_2_trait(scores,args)
File "/home/mucha/POPCORN/popcorn/sumstats.py", line 193, in init
if not data1['a1'][0].isupper():
File "/home/mucha/anaconda3/lib/python3.7/site-packages/pandas/core/series.py", line 850, in getitem
return self._values[key]
IndexError: index 0 is out of bounds for axis 0 with size 0
Traceback (most recent call last):
File "/home/mucha/POPCORN/popcorn/main.py", line 248, in
main()
File "/home/mucha/POPCORN/popcorn/main.py", line 220, in main
res = fit.fit_pg(data.data,args,M=M)
File "/home/mucha/POPCORN/popcorn/fit.py", line 243, in init
self.jackknife = jackknife.jackknife(close_call,data,res,args)
File "/home/mucha/POPCORN/popcorn/jackknife.py", line 17, in init
self.blocks, self.bs = self.get_blocks(N,args)
File "/home/mucha/POPCORN/popcorn/jackknife.py", line 33, in get_blocks
A = np.floor(np.linspace(0,N,nblocks+1)).astype(int)
File "<__array_function__ internals>", line 6, in linspace
File "/home/mucha/anaconda3/lib/python3.7/site-packages/numpy/core/function_base.py", line 113, in linspace
num = operator.index(num)
TypeError: 'numpy.float64' object cannot be interpreted as an integer