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brinkmanlab / IslandCompare

Pipeline for detecting and annotating genomic islands and relationships between the respective genomes
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Mauve generates potentially invalid file names #184

Open innovate-invent opened 5 years ago

innovate-invent commented 5 years ago

File names are generated from record id:

(base) root@df1e078e840b:/galaxy-central/database/job_working_directory/002/2608/working# ls final
 alignment2            alignment2.bbcols       dataset_3044.dat.gbk         'Salmonella enterica subsp. enterica Thompson, 6, 7:-:1, 5 NCTC5741_contigs.tab'  'Salmonella enterica subsp. enterica Thompson, 6, 7:-:1, 5 NCTC5741.fas.sslist'
 alignment2.backbone   alignment2.guide_tree   dataset_3044.dat.gbk.sslist  'Salmonella enterica subsp. enterica Thompson, 6, 7:-:1, 5 NCTC5741.fas'          'Salmonella enterica subsp. enterica Thompson, 6, 7:-:1, 5 NCTC5741_features.tab'