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brinkmanlab
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IslandCompare
Pipeline for detecting and annotating genomic islands and relationships between the respective genomes
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Genome tooltip hover time too long
#146
innovate-invent
opened
5 years ago
1
Vis zoom select area is smaller than expected
#145
innovate-invent
closed
5 years ago
0
Draft genome support
#144
innovate-invent
opened
5 years ago
1
Handle RefSeq GBK with plasmids
#143
innovate-invent
closed
5 years ago
1
Properly encode/decode accession into file name for ParSNP
#142
innovate-invent
closed
5 years ago
0
Don't scrub accession version from sequence IDs
#141
innovate-invent
closed
4 years ago
1
Vis hides merged islands
#140
innovate-invent
closed
4 years ago
2
Merge dev and cluster-vis
#139
innovate-invent
closed
4 years ago
0
Parsnp fails to output branches
#138
innovate-invent
closed
5 years ago
0
Make aspects of the pipeline optional
#137
innovate-invent
opened
5 years ago
0
GI Hunter integration
#136
innovate-invent
opened
5 years ago
0
SIGI-HMM crash with some datasets
#135
innovate-invent
closed
4 years ago
9
Update SIGI-HMM
#134
innovate-invent
opened
5 years ago
11
Pull in container refactor to a branch
#133
innovate-invent
closed
5 years ago
0
Add front-end to be served by vagrant webserver
#132
innovate-invent
closed
5 years ago
1
Use GFF as GI export format
#131
innovate-invent
closed
5 years ago
1
Implement Minimum Length Cut-off for GIs
#130
klgray25
closed
5 years ago
1
Export GI genes button does not work
#129
innovate-invent
closed
5 years ago
4
Pipeline sensitive to server path within container
#128
innovate-invent
closed
5 years ago
1
Upload fails with three files
#127
innovate-invent
closed
5 years ago
0
Commit to python3
#126
innovate-invent
closed
5 years ago
0
Remove extraneous files from repo
#125
innovate-invent
closed
5 years ago
0
Integration tests fail due to relative paths in container
#124
innovate-invent
closed
5 years ago
2
Worker errors out but is not reported in UI
#123
innovate-invent
closed
5 years ago
0
Hardcoded absolute path for all REST communication
#122
innovate-invent
closed
5 years ago
1
Output relavent AMR and VF annotations to file
#121
innovate-invent
opened
5 years ago
0
Integrate virulence factor annotations
#120
innovate-invent
opened
5 years ago
2
Update IslandPath-DIMOB and RGI
#119
innovate-invent
closed
4 years ago
3
Merge cluster-vis branch into dev
#118
innovate-invent
closed
5 years ago
8
Island Gene Download File - Missing First Gene
#117
klgray25
closed
5 years ago
2
Stored files not working consistently
#116
klgray25
closed
5 years ago
0
Add gitlab ci file
#115
adrianclim
closed
7 years ago
0
islandpath fails when genome file has a "." in the name
#114
KeithTilley
closed
5 years ago
0
user_newick and user_gi KeyError: 'user_file_contents'
#113
KeithTilley
closed
5 years ago
0
genbank file extension .gbff causes Mauve error
#112
KeithTilley
closed
7 years ago
2
Sidebar toggle may push results off page until zoom is reset
#111
KeithTilley
opened
7 years ago
0
Genes are duplicated
#110
KeithTilley
closed
5 years ago
1
Longest genome is cut off until zoom is reset
#109
KeithTilley
opened
7 years ago
0
Visualization not working with newicks with branching
#108
KeithTilley
closed
4 years ago
1
Not all genomes show on visualization
#107
KeithTilley
opened
7 years ago
6
Analysis loses genome sometime after submission
#106
KeithTilley
closed
5 years ago
0
Add RGI
#105
adrianclim
closed
7 years ago
0
Revert "Add RGI"
#104
adrianclim
closed
7 years ago
0
Add RGI
#103
adrianclim
closed
7 years ago
0
Add REST api
#102
adrianclim
closed
7 years ago
0
Add newest code
#101
adrianclim
closed
7 years ago
0
Add integration test for rgi component
#100
adrianclim
closed
7 years ago
0
Update Readme
#99
adrianclim
closed
7 years ago
0
Newest Version of Code
#98
adrianclim
closed
7 years ago
0
Major Updates
#97
adrianclim
closed
7 years ago
0
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