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brinkmanlab / islandpath

IslandPath standalone software
GNU General Public License v3.0
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Can't locate Bio/Perl.pm in @INC (you may need to install the Bio::Perl module) #17

Closed gucedac closed 2 years ago

gucedac commented 2 years ago

Hi, I tried to use islandpath but I had a problem with the installation. I already installed BioPerl, however, when I execute the program apper this error:

Can't locate Bio/Perl.pm in @INC (you may need to install the Bio::Perl module) (@INC contains: /media/guillermo/Work/miniconda3/envs/islandpath/opt/islandpath/lib /home/guillermo/perl5/lib/perl5 /media/guillermo/Work/miniconda3/envs/islandpath/lib/perl5/5.32/site_perl /media/guillermo/Work/miniconda3/envs/islandpath/lib/perl5/site_perl /media/guillermo/Work/miniconda3/envs/islandpath/lib/perl5/5.32/vendor_perl /media/guillermo/Work/miniconda3/envs/islandpath/lib/perl5/vendor_perl /media/guillermo/Work/miniconda3/envs/islandpath/lib/perl5/5.32/core_perl /media/guillermo/Work/miniconda3/envs/islandpath/lib/perl5/core_perl .) at /media/guillermo/Work/miniconda3/envs/islandpath/opt/islandpath/lib/GenomeUtils.pm line 52. BEGIN failed--compilation aborted at /media/guillermo/Work/miniconda3/envs/islandpath/opt/islandpath/lib/GenomeUtils.pm line 52. Compilation failed in require at /media/guillermo/Work/miniconda3/envs/islandpath/bin/islandpath line 45. BEGIN failed--compilation aborted at /media/guillermo/Work/miniconda3/envs/islandpath/bin/islandpath line 45. Can someone help me? Thanks

innovate-invent commented 2 years ago

Hi and thank you for your interest in islandpath. I recommend you run islandpath via the docker container:

docker run --rm -v$PWD:$PWD quay.io/biocontainers/islandpath:1.0.6--hdfd78af_0 islandpath