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brinkmanlab / islandpath

IslandPath standalone software
GNU General Public License v3.0
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problem with running docker version #20

Open gaworj opened 1 year ago

gaworj commented 1 year ago

Hello,

Thank you for such great tool!

I have tried to run it via docker:

docker run --rm -v"$(pwd):$(pwd)" quay.io/biocontainers/islandpath:1.0.6--hdfd78af_0 islandpath NC_003210.gbk NC_GIs_output.txt Smartmatch is experimental at /usr/local/opt/islandpath/lib/GenomeUtils.pm line 674. Smartmatch is experimental at /usr/local/opt/islandpath/lib/GenomeUtils.pm line 677. Smartmatch is experimental at /usr/local/opt/islandpath/lib/GenomeUtils.pm line 852. Error: /NC_003210.gbk is not readable

The same issue was with my files so I tried to run example file after downloading islandpath from Github.

Any hints?

Bests, Jan