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brisvag / blik

Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
https://brisvag.github.io/blik/
GNU General Public License v3.0
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Relion format update #50

Closed brisvag closed 3 years ago

brisvag commented 3 years ago

How do we deal with this? What additional info does it bring to us, if any?

alisterburt commented 3 years ago

not sure what you're referring to with this, do you mean the update of the convention in alisterburt/eulerangles?

brisvag commented 3 years ago

No, I'm referring to the fact that the new starfile format spits out multple dataframe. Or have I misunderstood?

alisterburt commented 3 years ago

ahhh gotcha!

Yes these are RELION 3.1+ STAR files with optics group information at the beginning.

We definitely need to be able to gracefully handle both cases, ideally without a user having to know about the existence of an alternative format from the one they have (i.e. let's try not to require a flag)

One additional piece of useful info is the pixel size is in the optics group information!! as well as the number of pixels in the box for each particle. We could use the pixel size info to move towards some rescaling functionality (#19)

brisvag commented 3 years ago

closed by #48 .