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brittanyblouin / ANCRTAdjust

An R package to adjust routine HIV testing data from antenatal care to reduce bias in estimating HIV prevalence trends
MIT License
2 stars 3 forks source link

Spell check #24

Closed seabbs closed 4 years ago

seabbs commented 4 years ago

Found a few spelling issues in the docs - although far fewer that in mine!

I recommend the spelling package for automatic spell checking. See here for an example implementation.

For this # openjournals/joss-reviews/issues/1740 review

m-maheu-giroux commented 4 years ago

We have integrated your suggestion. Thanks!

seabbs commented 4 years ago

Great - I assume that the spelling issues both reviewers identified in pull requests have been sorted?

ellessenne commented 4 years ago

I still get some spelling issues, e.g. see the following output from spelling::spell_check_package():

  WORD            FOUND IN
adjusment       README.md:97
                README.Rmd:101
adjuted         impcov_adjust.Rd:18
al              adjust_table.Rd:16,19
                impcov_adjust.Rd:33
                README.md:206
                README.Rmd:210
ANC             adjust_table.Rd:6,16
                ancrt.Rd:6,11,14,15,24
                ANCRTAdjust.Rd:7,9
                check_data.Rd:5,13,17,21,22,23,24,26,35,37,40,43,46,59,62,65
                data_clean.Rd:5,10,16,17,18,19,20,21,28,44,47
                descriptive_plot.Rd:11,14,15,20,21,22
                flag_outliers.Rd:11,16,17,19,21,23
                hiv_prv_cov.Rd:11,14,43
                hiv_prv_ipcw.Rd:11,16,17,18,19,20,45,46
                impcov_adjust.Rd:33
                mt_adjust.Rd:10
                quality_indicators.Rd:10,16,17,18,19,20,21,56,59
                title:1
                description:1
                README.md:7,9,16,29,31,33,56,57,58,59,60,61,99,104,166,206
                README.Rmd:11,13,20,33,35,37,60,61,62,63,64,65,103,108,170,210
bleow           README.md:173
                README.Rmd:177
containts       adjust_table.Rd:16
cov             hiv_prv_cov.Rd:36
detaield        README.md:173
                README.Rmd:177
diangosed       ancrt.Rd:13
disaggregated   data_clean.Rd:25,50
                README.md:63
                README.Rmd:67
eahc            ancrt.Rd:24
et              adjust_table.Rd:16,19
                impcov_adjust.Rd:33
                README.md:206
                README.Rmd:210
frac            README.md:192
                README.Rmd:196
ggplot          descriptive_plot.Rd:31,33,35
Giroux          adjust_table.Rd:16,19
                ANCRTAdjust.Rd:23
                check_data.Rd:70
                data_clean.Rd:75
                descriptive_plot.Rd:67
                flag_outliers.Rd:73
                hiv_prv_cov.Rd:48
                hiv_prv_ipcw.Rd:54
                impcov_adjust.Rd:33,36
                mt_adjust.Rd:47
                plot_rawadjusted.Rd:44
                quality_indicators.Rd:65
                README.md:206
                README.Rmd:210
Github          README.md:22,246
                README.Rmd:26,250
hiv             hiv_prv_cov.Rd:34,35,36
impcov          plot_rawadjusted.Rd:11,14,16,17
inoperational   hiv_prv_ipcw.Rd:49
inuitive        README.md:93
                README.Rmd:97
IPCW            README.md:190
                README.Rmd:194
Maheu           adjust_table.Rd:16,19
                ANCRTAdjust.Rd:23
                check_data.Rd:70
                data_clean.Rd:75
                descriptive_plot.Rd:67
                flag_outliers.Rd:73
                hiv_prv_cov.Rd:48
                hiv_prv_ipcw.Rd:54
                impcov_adjust.Rd:33,36
                mt_adjust.Rd:47
                plot_rawadjusted.Rd:44
                quality_indicators.Rd:65
                README.md:206
                README.Rmd:210
MER             adjust_table.Rd:16
                impcov_adjust.Rd:33
                README.md:206
                README.Rmd:210
outputed        README.md:225
                README.Rmd:229
overal          README.md:95
                README.Rmd:99
PEPFAR          adjust_table.Rd:16
                impcov_adjust.Rd:33
                README.md:206
                README.Rmd:210
perecentage     impcov_adjust.Rd:18
preavlence      README.md:206
prevalences     ANCRTAdjust.Rd:10
                plot_rawadjusted.Rd:27,28
prv             hiv_prv_cov.Rd:35
snu             flag_outliers.Rd:28,38
                hiv_prv_cov.Rd:17,24,31,40
                hiv_prv_ipcw.Rd:24,30,37
                plot_rawadjusted.Rd:13,23
strafied        README.md:211
                README.Rmd:215
stratifed       impcov_adjust.Rd:31
                README.md:234
                README.Rmd:238
subnational     flag_outliers.Rd:28
                hiv_prv_cov.Rd:17,31,44
                hiv_prv_ipcw.Rd:24,37,51
                plot_rawadjusted.Rd:13
                README.md:147,181,190,211
                README.Rmd:151,185,194,215
totalling       adjust_table.Rd:16
                impcov_adjust.Rd:33
                README.Rmd:210
wih             README.md:169
                README.Rmd:173

You also may want to add the Language field to the DESCRIPTION file, e.g. by adding:

Language: en_GB

(or any language you prefer).

Please fix the typos above before closing this issue!