brittneybrinsfield / pysam

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parser parameter should be moved from Tabixfile.fetch to Tabixfile.__init__ #143

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
Tabixfile.fetch() takes as a parser as a parameter. This means that the user 
must pass in the same parser every time he or she fetches a new region. As a 
user, I have never needed to switch my parsers in the middle of fetching 
records from the same tabix file, however, I have always had the need to use 
the same parser for multiple regions of the same tabix file. This parameter 
should be moved to Tabixfile.__init__ where it can be set upon instantiation.

Original issue reported on code.google.com by chris.la...@gmail.com on 24 Oct 2013 at 8:42

GoogleCodeExporter commented 9 years ago
Hi Chris,

thanks, will do.

Best wishes,
Andreas

Original comment by andreas....@gmail.com on 4 Nov 2013 at 8:19

GoogleCodeExporter commented 9 years ago
Done.

Original comment by andreas....@gmail.com on 24 Nov 2013 at 10:15