Documentation request.

[GoogleCodeExporter]

I could not easily find documentation about the operations in the CIGAR list of 
tuples, so I extracted them from the source. Perhaps it would be a good idea to 
put the following table somewhere in the documentation.

M BAM_CMATCH     0
I BAM_CINS       1
D BAM_CDEL       2
N BAM_CREF_SKIP  3
S BAM_CSOFT_CLIP 4
H BAM_CHARD_CLIP 5
P BAM_CPAD       6
= BAM_CEQUAL     7
X BAM_CDIFF      8

Original issue reported on code.google.com by j.f.j.la...@lumc.nl on 5 Jun 2012 at 9:53

[GoogleCodeExporter]

Thanks, I hav added the table to the documentation.

I have also added the cigarstring field, which will do the translation.

Best wishes,
Andreas

Original comment by andreas....@gmail.com on 21 Nov 2012 at 1:27

• Changed state: Fixed