Closed GoogleCodeExporter closed 9 years ago
Hi Yong,
We currently don't support importing of sequences from the CFG nomenclature in
GlycoWorkBench.
Right now, the best advice for converting structures from the CFG format, is to
do some programming:
You'll need to check out the trunk of the eurocarb source, and compile it. In
the top level lib directory, you
should find a MolecularFramework.jar (or something named similarly). Using all
the jars in the lib directory as
your classpath, compile and run this program:
http://code.google.com/p/eurocarb/source/browse/trunk/application/MolecularFrame
work/src/org/eurocar
bdb/MolecularFramework/examples/CarbbankToLinucs.java
If that works, you should be able to change the class that performs the
importing from
SugarImporterCarbbank to SugarImporterCFG, compile again, and use this as a
stub to develop a more generic
converter program. Unfortunately not the simplest way to do this, but we're a
bit short of active developers at
the moment.
Cheers,
Hiren
Original comment by hir...@gmail.com
on 21 Oct 2009 at 10:11
Hi Yong,
I've just been told by one of the developers that I'm wrong, and that you
should be using the "Import from
Glycomindes" option for importing CFG nomenclature sequences.
I'm marking this as a bug so that the menu-label is changed to reflect that it
can import CFG structures.
Thanks,
Hiren
Original comment by hir...@gmail.com
on 9 Nov 2009 at 7:20
Original issue reported on code.google.com by
fuga...@gmail.com
on 21 Oct 2009 at 3:39