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brleeflang / eurocarb

Automatically exported from code.google.com/p/eurocarb
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Crash #56

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
While creating and moving structures in compact mode in 66% size and having 
the glycans to be arranged acccording to their linkage position, suddently 
it crashed.

java.lang.Exception: Cannot place residue Gal in position(s) -90
    at 
org.eurocarbdb.application.glycanbuilder.BookingManager.add(BookingManager.
java:58)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanRenderer.assignPosition(Glyc
anRenderer.java:634)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanRenderer.assignPosition(Glyc
anRenderer.java:650)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanRenderer.assignPosition(Glyc
anRenderer.java:650)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanRenderer.computeBoundingBoxe
s(GlycanRenderer.java:546)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanRenderer.computeBoundingBoxe
s(GlycanRenderer.java:494)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanRenderer.computeBoundingBoxe
s(GlycanRenderer.java:464)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanCanvas.paintComponent(Glycan
Canvas.java:1193)
    at javax.swing.JComponent.paint(Unknown Source)
    at javax.swing.JComponent.paintToOffscreen(Unknown Source)
    at 
javax.swing.RepaintManager$PaintManager.paintDoubleBuffered(Unknown Source)
    at javax.swing.RepaintManager$PaintManager.paint(Unknown Source)
    at javax.swing.RepaintManager.paint(Unknown Source)
    at javax.swing.JComponent._paintImmediately(Unknown Source)
    at javax.swing.JComponent.paintImmediately(Unknown Source)
    at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
    at javax.swing.RepaintManager.paintDirtyRegions(Unknown Source)
    at javax.swing.RepaintManager.seqPaintDirtyRegions(Unknown Source)
    at 
javax.swing.SystemEventQueueUtilities$ComponentWorkRequest.run(Unknown 
Source)
    at java.awt.event.InvocationEvent.dispatch(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown 
Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.Dialog$1.run(Unknown Source)
    at java.awt.Dialog$3.run(Unknown Source)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.awt.Dialog.show(Unknown Source)
    at java.awt.Component.show(Unknown Source)
    at java.awt.Component.setVisible(Unknown Source)
    at java.awt.Window.setVisible(Unknown Source)
    at java.awt.Dialog.setVisible(Unknown Source)
    at 
org.eurocarbdb.application.glycanbuilder.LogUtils.report(LogUtils.java:125)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanRenderer.computeBoundingBoxe
s(GlycanRenderer.java:576)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanRenderer.computeBoundingBoxe
s(GlycanRenderer.java:494)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanRenderer.computeBoundingBoxe
s(GlycanRenderer.java:464)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanCanvas.showSelection(GlycanC
anvas.java:2642)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanCanvas.fireUpdatedSelection(
GlycanCanvas.java:2631)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanCanvas.resetSelection(Glycan
Canvas.java:1338)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanCanvas.documentChanged(Glyca
nCanvas.java:2594)
    at 
org.eurocarbdb.application.glycanbuilder.BaseDocument.fireDocumentChanged(B
aseDocument.java:435)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanCanvas.updateAndMantainSelec
tion(GlycanCanvas.java:1761)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanCanvas.onMoveCCW(GlycanCanva
s.java:1874)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanCanvas.actionPerformed(Glyca
nCanvas.java:2562)
    at 
org.eurocarbdb.application.glycanbuilder.GlycanAction.actionPerformed(Glyca
nAction.java:175)
    at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
    at javax.swing.AbstractButton$Handler.actionPerformed(Unknown 
Source)
    at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown 
Source)
    at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
    at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown 
Source)
    at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source)
    at java.awt.Component.processMouseEvent(Unknown Source)
    at javax.swing.JComponent.processMouseEvent(Unknown Source)
    at java.awt.Component.processEvent(Unknown Source)
    at java.awt.Container.processEvent(Unknown Source)
    at java.awt.Component.dispatchEventImpl(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown 
Source)
    at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
    at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Window.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown 
Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown 
Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)

Original issue reported on code.google.com by a.ara...@gmail.com on 28 May 2010 at 10:09

GoogleCodeExporter commented 9 years ago 
Hi thanks for your bug report, I'll investigate this issue within the next 
couple of days.

Original comment by Damerel...@googlemail.com on 31 Aug 2010 at 2:48