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broadinstitute / ABC-Enhancer-Gene-Prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
MIT License
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Install QC #211

Closed snglcl closed 5 months ago

snglcl commented 7 months ago

Hello, thank you for this great tool!

I ran the install pipeline, but my QC plots for the snakemake config are quite different from the provided version. Is my ABC not running correctly? I am running abc-env. Thanks! QCPlots_snakemakeconfig

atancoder commented 7 months ago

are you referring to the QC plots generated from the example run? If so, I wouldn't really compare to the example as it's only based on chromosome 22.

snglcl commented 7 months ago

Yes, I was running test file via snakemake -j1, and I was expecting the same QC output as the link.

atancoder commented 7 months ago

Which link are you referring to?