engreitz
commented
4 months ago Hi Jiecong, No, you should not modify the qnorm parameter. Use the provided file Best, Jesse
On Sat, Aug 3, 2024 at 10:19 AM Jiecong Lin @.***> wrote:
Dear Team,
I wanted to express my deepest appreciation for creating such remarkable tools for predicting promoter-enhancer interactions. They have proven to be tremendously helpful!
I have a quick question about the use of the pipeline for different cell lines. Should I modify the "qnorm" parameter in the config.yaml file, specifically changing it from "reference/EnhancersQNormRef.K562.txt", when running the pipeline for other cell lines?
Thank you for your assistance!
Best, Jiecong
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-- Jesse Engreitz, PhD Assistant Professor, Department of Genetics BASE Research Initiative, Betty Irene Moore Children’s Heart Center Stanford University School of Medicine www.engreitzlab.org +1 (206) 310-3935 Pronouns: He/him/his
Dear Team,
I wanted to express my deepest appreciation for creating such remarkable tools for predicting promoter-enhancer interactions. They have proven to be tremendously helpful!
I have a quick question about the use of the pipeline for different cell lines. Should I modify the "qnorm" parameter in the config.yaml file, specifically changing it from "reference/EnhancersQNormRef.K562.txt", when running the pipeline for other cell lines?
Thank you for your assistance!
Best, Jiecong