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broadinstitute / ABC-Enhancer-Gene-Prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
MIT License
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Where can i find the Reference files for the mouse Reference genome mm10 #232

Open mano2991 opened 3 months ago

mano2991 commented 3 months ago

As mentioned in the config file, where can I download the reference genome for mm10? I have seen similar posts asked by multiple people, and they are still open. Can anyone help or guide us on the steps to get these files?

        chrom_sizes: "reference/hg38/GRCh38_EBV.no_alt.chrom.sizes.tsv"
        regions_blocklist: "reference/hg38/GRCh38_unified_blacklist.bed"
        ubiquitous_genes: "reference/UbiquitouslyExpressedGenes.txt"
        genes: "reference/hg38/CollapsedGeneBounds.hg38.bed"
        genome_tss: "reference/hg38/CollapsedGeneBounds.hg38.TSS500bp.bed"
        qnorm: "reference/EnhancersQNormRef.K562.txt"
        abc_thresholds: "reference/abc_thresholds.tsv"