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broadinstitute / ABC-Enhancer-Gene-Prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
MIT License
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Where I can get the qnorm file #233

Closed nttg8100 closed 2 months ago

nttg8100 commented 2 months ago

I check the pipeline has the qnorm argument that can be used. However, the file is provided for the K562 sample. If I use for another sample, where or how I can generate this input ?

engreitz commented 2 months ago

Use this same file for other samples

On Mon, Aug 26, 2024 at 10:12 AM Thanh Giang Nguyen Tan < @.***> wrote:

I check the pipeline has the qnorm argument that can be used. However, the file is provided for the K562 sample. If I use for another sample, where or how I can generate this input ?

— Reply to this email directly, view it on GitHub https://github.com/broadinstitute/ABC-Enhancer-Gene-Prediction/issues/233, or unsubscribe https://github.com/notifications/unsubscribe-auth/AA3LGEBYVC2Y7SMH6PK6HSLZTNOYVAVCNFSM6AAAAABNENQ36OVHI2DSMVQWIX3LMV43ASLTON2WKOZSGQ4DOMZVGAZTAOI . You are receiving this because you are subscribed to this thread.Message ID: @.***>

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