broadinstitute / ABC-Enhancer-Gene-Prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
MIT License
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Duplicate score_column in `predict.py` #235

Open nttg8100 opened 2 months ago

nttg8100 commented 2 months ago

This one is already defined in the argument of the command line, I think if the hic file does not exist, it will return the "" for hic params. https://github.com/broadinstitute/ABC-Enhancer-Gene-Prediction/blob/main/workflow/rules/predictions.smk#L10C3-L10C41