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broadinstitute / CP186-A549-WG

BSD 3-Clause "New" or "Revised" License
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0./4.image-and-segmentation-qc error #2

Open ErinWeisbart opened 2 years ago

ErinWeisbart commented 2 years ago 
Traceback (most recent call last):
  File "recipe/0.preprocess-sites/4.image-and-segmentation-qc.py", line 506, in <module>
    sat_df = sat_df.loc[:, sat_df_cols]
  File "/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/pandas/core/indexing.py", line 889, in __getitem__
    return self._getitem_tuple(key)
  File "/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/pandas/core/indexing.py", line 1069, in _getitem_tuple
    return self._getitem_tuple_same_dim(tup)
  File "/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/pandas/core/indexing.py", line 775, in _getitem_tuple_same_dim
    retval = getattr(retval, self.name)._getitem_axis(key, axis=i)
  File "/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/pandas/core/indexing.py", line 1113, in _getitem_axis
    return self._getitem_iterable(key, axis=axis)
  File "/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/pandas/core/indexing.py", line 1053, in _getitem_iterable
    keyarr, indexer = self._get_listlike_indexer(key, axis, raise_missing=False)
  File "/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/pandas/core/indexing.py", line 1266, in _get_listlike_indexer
    self._validate_read_indexer(keyarr, indexer, axis, raise_missing=raise_missing)
  File "/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/pandas/core/indexing.py", line 1322, in _validate_read_indexer
    "Passing list-likes to .loc or [] with any missing labels "
KeyError: "Passing list-likes to .loc or [] with any missing labels is no longer supported. The following labels were missing: Index(['Metadata_Site_Full'], dtype='object'). See https://pandas.pydata.org/>