search

broadinstitute / CP186-A549-WG

BSD 3-Clause "New" or "Revised" License
2 stars 0 forks source link

1./2.normalize #9

Open ErinWeisbart opened 2 years ago

ErinWeisbart commented 2 years ago

When normalizing single cells get warnings:

/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/sklearn/utils/extmath.py:986: RuntimeWarning: invalid value encountered in true_divide
  updated_mean = (last_sum + new_sum) / updated_sample_count
/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/sklearn/utils/extmath.py:991: RuntimeWarning: invalid value encountered in true_divide
  T = new_sum / new_sample_count
/home/ubuntu/miniconda3/envs/pooled-cell-painting/lib/python3.7/site-packages/sklearn/utils/extmath.py:1021: RuntimeWarning: invalid value encountered in true_divide
  new_unnormalized_variance -= correction ** 2 / new_sample_count