Running Cellbender with multiple fpr

[cyrilcros]

Hi, from the reference documentation, it looks like you can specify multiple values, which will create multiple output files. How do you do that? I tried running cellbender --fpr 0.1 --fpr 0.5 --fpr 0.01 which only did one value. --fpr A,B,C doesn't work. I do see how you can just reuse the checkpoint archive file to get the other values, by running a new command. Thanks for this tool!

[sjfleming]

Thanks for your question @cyrilcros ! I should include an explicit example of this somewhere in the docs. You can specify multiple values by putting a space between values rather than a comma, like this: --fpr 0.01 0.05