Cellbender paper - UMAPs

broadinstitute / CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

https://cellbender.rtfd.io

BSD 3-Clause "New" or "Revised" License

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Cellbender paper - UMAPs #311

Open dbuszta opened 11 months ago

dbuszta commented 11 months ago

Hi there,

I'm trying to recreate the UMAPs you present in your paper (Fig 2 f-h) on my data, but I'm confused about how these were created - how are you showing log counts? Did you use a defined representation on the raw data or just the default?