IndexError: index 9500 is out of bounds for axis 0 with size 9500**

broadinstitute / CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

https://cellbender.rtfd.io

BSD 3-Clause "New" or "Revised" License

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IndexError: index 9500 is out of bounds for axis 0 with size 9500** #331

Open imrankhan27 opened 7 months ago

imrankhan27 commented 7 months ago

I am getting this error after running my code for CellBinder. IndexError: index 9500 is out of bounds for axis 0 with size 9500

cellbender remove-background \ --input filtered_feature_bc_matrix \ --output cellbender_output.h5 \ --expected-cells 5000 \ --total-droplets-included 9500

I changed the parameter for total-droplets-included from 20000 to 9500 cells I have from my web_summary file from 10X. Any thoughts on how to resolve it?

Appreciate it.