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broadinstitute / CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
https://cellbender.rtfd.io
BSD 3-Clause "New" or "Revised" License
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Update cli.py to add newer Cell Ranger feature types #339

Closed jpintar closed 2 months ago

jpintar commented 3 months ago

Closes #340

In Cell Ranger 7+, there is a longer list of feature types one can specify in cellranger multi. These should be added to the list of allowed feature types in CellBender so they won't be rejected by --exclude-feature-types (the Multiplexing Capture feature is of particular note here).

sjfleming commented 2 months ago

Looks great @jpintar , thank you!