How to run CellBender for a pooling library?

broadinstitute / CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

https://cellbender.rtfd.io

BSD 3-Clause "New" or "Revised" License

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How to run CellBender for a pooling library? #354

Open tewengtong opened 2 months ago

tewengtong commented 2 months ago

Dear author:

I am using CellBender to identify ambient RNA in a library of 8 samples. My question is: do I need to treat each sample separately to perform CellBender or can I treat this library as a whole?

Thank you!