Question about input h5 file

broadinstitute / CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

https://cellbender.rtfd.io

BSD 3-Clause "New" or "Revised" License

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Question about input h5 file #361

Open Linxiaobuskiy opened 1 month ago

Linxiaobuskiy commented 1 month ago

Dear CellBender people,

I'm using the h5 file generated by read_10x_mtx and write_h5ad which are from scanpy, so when I trying to use this h5 as the input for CellBender, the error occurs "DataTypeWarning: Unsupported type for attribute 'ordered' in node 'feature_types'. Offending HDF5 class: 8". Do you have any advise to solve this error?

Linxiaobuskiy commented 1 month ago

never mind, I find I can directly input count matrix