broadinstitute / Drop-seq

Java tools for analyzing Drop-seq data
MIT License
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Small update to donor assignment to expose the dataframe / classifica… #440

Closed jamesnemesh closed 3 months ago

jamesnemesh commented 3 months ago

Small update to donor assignment to make the function getSingletDoubletDF public. This takes the outputs of the donor assignment and doublet detection Java programs and creates a single dataframe of results per cell that is annotated with the doublet classification and donor label. This is used by other functions in QC for plotting, and is generally useful.

Fixed DetectDoublets logging when a MAX_ERROR_RATE is specified to properly log the value (it was logging the FIXED_ERROR_RATE instead.)