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broadinstitute / Drop-seq

Java tools for analyzing Drop-seq data
MIT License
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ERROR: Could not find one and only one picard.jar in deployment. #450

Open gabriella-quinn opened 2 weeks ago

gabriella-quinn commented 2 weeks ago

Is there anyway that I can specify one PATH to picard? I am on an HPC with an institution and I am assuming that is why I am having this issue. Below is what I have tried and the error that I get from it.

conda activate omics conda install picard conda install bioconda::dropseq_tools

bash Drop-seq_alignment.sh \

-g \ -r \ -o \ P10_SI_S1_L001_R1.bam

ERROR: Could not find one and only one picard.jar in deployment.

alecw commented 1 week ago

Hi @gabriella-quinn ,

What version of the tools are you using?

Run this command in the directory in which you have deployed the tools, and send the output:

find ./ -name 'picard*.jar'