Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
Ramani Kothadia (27):
Docker versioning
Replace Docker in WDL
Bug Fix: setup.sh
Update WDL on Terra
Bug Fix: Update WDL on Terra
Renaming pgdac to panoply
Replacing pgdac with panoply in files
Replace pgdac in scripts
Update Docker panoply_libs
Rename PANOPLY/src
Rebrand base images in Dockerfiles
Bug Fix: Replace in Dockerfile
Remove modules
Update Modules with latest commit tag
Remove comments used for testing
Changed broadcptac to broadcptacdev for normalize module
Minor changes to update.sh
Do "cleanup" only in the current task dir
Separate task cleanup with hydrant cleanup
change cleanup argument in update.sh
Revert "change cleanup argument in update.sh"
add hydrant cleanup
test-commit
Revert "test-commit"
Additional Cleanup Changes
Latest broadcptacdev Dockerfiles
Test commit after rebase
Ramani Kothadia (27): Docker versioning Replace Docker in WDL Bug Fix: setup.sh Update WDL on Terra Bug Fix: Update WDL on Terra Renaming pgdac to panoply Replacing pgdac with panoply in files Replace pgdac in scripts Update Docker panoply_libs Rename PANOPLY/src Rebrand base images in Dockerfiles Bug Fix: Replace in Dockerfile Remove modules Update Modules with latest commit tag Remove comments used for testing Changed broadcptac to broadcptacdev for normalize module Minor changes to update.sh Do "cleanup" only in the current task dir Separate task cleanup with hydrant cleanup change cleanup argument in update.sh Revert "change cleanup argument in update.sh" add hydrant cleanup test-commit Revert "test-commit" Additional Cleanup Changes Latest broadcptacdev Dockerfiles Test commit after rebase