Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
Add Sample Sets without running split-samples all over again
Check for existing sample sets and create a set_copy (only checks for duplicate sample-set names and not the set contents)
Converged PANDA tool itself into the notebook (tested OK)
Simplified choice interface
panda-sets retrieve split input files from the google bucket and then coalesce them into aggregate files
For soft-link creation to work on Terra Notebook Terminal, change into the directory of soft-links first and then create soft links instead of giving absolute addresses from a random location
broadcptacdev/panda is built on top of broadcptacdev/panda_config_libs:0.0 for fast and easy updates to the panda docker
Add a default sample set (all) consisting of all samples and only create sample sub-sets (Requires Type column for this to work)
Changes:
set_copy(only checks for duplicate sample-set names and not the set contents)panda-setsretrieve split input files from the google bucket and then coalesce them into aggregate filesbroadcptacdev/pandais built on top ofbroadcptacdev/panda_config_libs:0.0for fast and easy updates to the panda dockerall) consisting of all samples and only create sample sub-sets (Requires Type column for this to work)