Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
Configuration files for proteome, phosphoproteome, and acetylome have been added
A new module that reads the config.yaml file and generates an array of types has been added
panoply_unified_pre was added from the perspective that if we have a list of types, then we can go over each of them and call panoply_main for each type. However, at this point, such a unified workflow seems to have many design obstacles that need to be discussed before beginning implementation.
panoply_mainWDL has been addedconfig.yamlfile and generates an array of types has been addedpanoply_unified_prewas added from the perspective that if we have a list of types, then we can go over each of them and callpanoply_mainfor each type. However, at this point, such a unified workflow seems to have many design obstacles that need to be discussed before beginning implementation.