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broadinstitute / PANOPLY

Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
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Alphabet function #30

Closed hsiaoyi0504 closed 3 years ago

hsiaoyi0504 commented 3 years ago

Hi there, the question is not directly related to any bug, but I can't find any place in which this alphabet function is defined. This alphabet function seems to generate a whole series of alphabets, though.

https://github.com/broadinstitute/PANOPLY/blob/39133217c4c60d2e71e790d2fa253040d03fa62b/src/panoply_mo_nmf/nmf_functions.R?_pjax=%23repo-content-pjax-container#L1057

karstenkrug commented 3 years ago

Hi, the alphabet function is part of the pals R package:

https://cran.r-project.org/web/packages/pals/vignettes/pals_examples.html

hsiaoyi0504 commented 3 years ago

Got it. Thanks!