Azurize panoply_fragpipe_search WDL (with tarred input file)

broadinstitute / PANOPLY

Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)

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Azurize panoply_fragpipe_search WDL (with tarred input file) #44

Open aawdeh opened 6 months ago

aawdeh commented 6 months ago

Goal here is to have the WDL run on both GCP and Azure.

Changed Directory type to a tarred file -- as this was not working on Azure.
Updated paths such that /cromwell_root is now changed to current working directory in Azure (This also works in GCP.)