Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
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Running proteomics only analysis, error in validate_input(): ERROR. Genomics data (cna/rna) missing #45
The PANOLY main workflow documentation says I can run analysis with just pome data, no rna/cna required. However, the entrypoint to register data into table (PANOPLY-startup-notebook) seems to expect full multiome data with cna/rna included.
Log:
$$ Enter uploaded zip file name (test.zip): 240802_rsy_panoply.zip
.. proteome.gct: 1
.. groups.csv: 8
.. sample-annotation.csv: 7
============================
.. INFO. Sample annotation file successfully validated.
============================
Error in validate_input():
============================
.. ERROR. Genomics data (cna/rna) missing.
============================
Traceback:
1. panda_input()
2. validate_input()
3. stop(printX("ERROR", glue("Genomics data ({paste (required.genomics.types, collapse='/')}) missing")))
Is there a different way to register data to Workspace > DATA > TABLES?
The PANOLY main workflow documentation says I can run analysis with just pome data, no rna/cna required. However, the entrypoint to register data into table (PANOPLY-startup-notebook) seems to expect full multiome data with cna/rna included.
Log:
Is there a different way to register data to Workspace > DATA > TABLES?