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broadinstitute / PhylogicNDT

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Error: No module named emd #11

Closed abenjak closed 5 years ago

abenjak commented 5 years ago

Hello, I installed PhylogicNDT on Docker as instructed, but PhylogicNDT.py exits with: root@21913eaf8cc6:/phylogicndt# ./PhylogicNDT.py --help INFO:root:Using fast logsumexp /phylogicndt/BuildTree/build_tree_log.log Traceback (most recent call last): File "./PhylogicNDT.py", line 19, in <module> import BuildTree.CellPopulation File "/phylogicndt/BuildTree/CellPopulation.py", line 6, in <module> from .BuildTreeEngine import BuildTreeEngine File "/phylogicndt/BuildTree/BuildTreeEngine.py", line 7, in <module> import ShuffleMutations File "/phylogicndt/BuildTree/ShuffleMutations.py", line 4, in <module> from emd import emd ImportError: No module named emd

The same happens with the local installation. Running on Linux Mint 19.1.

Best regards, Andrej

abenjak commented 5 years ago

It works with Singularity.