Dear Developer,
With the new commit, the previous "out of bounds error when running SinglePatientTiming" has been solved. While there seem to be another minor issue popped up an error message returned is shown below:
Traceback (most recent call last):
File "${PhylogicNDT_HOME}/PhylogicNDT.py", line 515, in <module>
args.func(args)
File "${PhylogicNDT_HOME}/SinglePatientTiming/SinglePatientTiming.py", line 51, in run_tool
timing_engine.time_events()
File "${PhylogicNDT_HOME}/SinglePatientTiming/TimingEngine.py", line 216, in time_events
cn_event.get_pi_dist_for_gain()
File "${PhylogicNDT_HOME}/SinglePatientTiming/TimingEngine.py", line 560, in get_pi_dist_for_gain
p2_real = self.get_p2_dist_for_gain()
File "${PhylogicNDT_HOME}/SinglePatientTiming/TimingEngine.py", line 548, in get_p2_dist_for_gain
mut_p2_dist += np.sum(mut.log_mult_dist, 1)
File "${Python_Home}/envs/Conda2/lib/python2.7/site-packages/numpy/core/fromnumeric.py", line 1848, in sum
out=out, **kwargs)
File "${Python_Home}/envs/Conda2/lib/python2.7/site-packages/numpy/core/_methods.py", line 32, in _sum
return umr_sum(a, axis, dtype, out, keepdims)
ValueError: 'axis' entry is out of bounds
Hope this information would help, thanks a lot for updating!
Dear Developer, With the new commit, the previous "out of bounds error when running SinglePatientTiming" has been solved. While there seem to be another minor issue popped up an error message returned is shown below:
Hope this information would help, thanks a lot for updating!