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Allele-specific copy number from PhylogicNDT or ABSOLUTE #53

Open juberpatel opened 3 years ago

juberpatel commented 3 years ago

Hello!

I was wondering How I can answer this question from either PhylogicNDT out or ABSOLUTE output:

For a particular mutation, what is the mutant allele copy number and what is the total copy number?

In the .mut_ccfs.txt file I see Allelic_CN_minor and Allelic_CN_major fields but how do I know if the mutant allele is the major allele or minor allele?

Thanks,

Juber

juberpatel commented 3 years ago

In fact, I notice that values for Allelic_CN_minor and Allelic_CN_major fields are always "nan".

lincj1994 commented 1 year ago

Hi. I'm wondering if you have figured it out. Which index means mutant allele CN?