Allows output of the cluster CCF trace with option --cluster_ccf_tracewhen running BuildTree or CellPopulation
Allows for selecting the colors for non-consecutive clusters (if trying to match WES and WGS runs, for instance) by passing a comma-separated list to --cluster_order
Allows for selecting a certain tree number (--tree_number <iter_one_indexed>) when running CellPopulation, to get the CCF Trace for a specific tree iteration
--cluster_ccf_tracewhen running BuildTree or CellPopulation--cluster_order--tree_number <iter_one_indexed>) when running CellPopulation, to get the CCF Trace for a specific tree iteration