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broadinstitute / PhylogicNDT

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--impute crashes #8

Open SebastianHollizeck opened 5 years ago

SebastianHollizeck commented 5 years ago

Hey,

I am running an analysis of my samples and after a few seconds the program crashes with 

Traceback (most recent call last):
  File "/home/shollizeck/PhylogicNDT/PhylogicNDT.py", line 342, in <module>
    args.func(args)
  File "/home/shollizeck/PhylogicNDT/Cluster/Cluster.py", line 74, in run_tool
    patient_data.preprocess_samples()
  File "/home/shollizeck/PhylogicNDT/data/Patient.py", line 275, in preprocess_samples
    mis_sample._mut_varstring_hastable[mut.var_str] = mis_sample.concordant_variants[-1]
AttributeError: TumorSample instance has no attribute '_mut_varstring_hastable'

only when setting --impute though.