broadinstitute SpliceAI-lookup issues

broadinstitute / SpliceAI-lookup

Website for checking SpliceAI and Pangolin scores:

https://spliceailookup.broadinstitute.org

MIT License

18 stars 7 forks source link

issues

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TGG Viewer: Authorization is required, but Google oAuth has not been initalized. Contact your site administrator for assistance.: undefined

#79 CaptainLabMan opened 1 week ago
1
ModuleNotFoundError: No module named 'bw2_annotation_utils'

#78 xiucz closed 1 month ago
2
only run debug server if executing file directly (not when import)

#77 bpow closed 3 months ago
0
Dependency updates: keras and pyvcf3

#76 bpow closed 3 months ago
1
Clarify which version of tensorflow is used

#75 bpow closed 3 months ago
1
Consider using PyVCF3 to avoid pinning setuptools

#74 bpow closed 3 months ago
1
Ensembl API is unable to parse the variant

#73 cfcranston closed 3 months ago
1
SpliceAI score issue

#72 NYGHGenetics closed 5 months ago
8
Issue with API Timeout Error

#71 kaycho88 closed 6 months ago
1
What is the plotting convention for the location of the delta bar in the viewer?

#70 SophieCandille closed 2 months ago
6
warn about and/or provide more info for insertion variants that may be affected by issue #67

#69 bw2 closed 3 months ago
1
Flank distance maximum changed?

#68 NM-G08 closed 6 months ago
2
Issue with duplications of the intron/exon boundary

#67 SophieCandille closed 3 months ago
5
Missing certificate chain

#66 Pacdam closed 6 months ago
3
Unable to reach server

#65 martbro closed 7 months ago
4
API call failed

#64 mikespiller1 closed 7 months ago
2
Pangolin Installation

#63 neilmolyneaux closed 7 months ago
2
Request: Most recent pre-computed SpliceAI scores

#62 wwgordon closed 9 months ago
2
Cross-Origin Request Blocked

#61 lindenb closed 9 months ago
3
For hg19 variants, show hg19 versions of (or disable) the optional igv tracks (ie. GTEx, segdups, mappability)

#60 bw2 closed 9 months ago
0
Is masking working for this variant?

#59 DELAMHACH closed 3 months ago
1
How Delta score is compute from the alt and Ref score?

#58 Manuel-DominguezCBG closed 3 months ago
4
Wrong file on annotations download site

#57 jzluo closed 10 months ago
2
Type of site gained for Pangolin?

#56 gm-bee closed 10 months ago
1
Table layout

#55 cmschwanke closed 11 months ago
3
Pangolin scores are showing as negative values

#54 gm-bee closed 11 months ago
0
How can I modify the Gene annotation file in your repository.

#53 Manuel-DominguezCBG closed 11 months ago
6
Clarification About SpliceAI Web Tool Version Updates

#52 JAZ20030707 closed 1 year ago
1
Container for your app

#51 Manuel-DominguezCBG closed 11 months ago
19
Annotation not loading

#50 cmkoellner closed 1 year ago
2
Can I disable REDIS?

#49 Manuel-DominguezCBG closed 1 year ago
1
Linkouts under Pangolin results do not work

#48 gm-bee closed 11 months ago
2
Pangolin multi-header bug fix

#47 pj-sullivan closed 1 year ago
0
UI bug: Multiple canonical transcripts listed.

#46 pj-sullivan closed 1 year ago
0
Reimplemented survey link button

#45 pj-sullivan closed 1 year ago
0
Added feedback survey to index.html

#44 pj-sullivan closed 1 year ago
0
Transcript Dependent Scores

#43 officedronestrike closed 1 year ago
1
Interesting case that produces a disagreement between SpliceAI and ApliceAI lookup

#42 Manuel-DominguezCBG closed 1 year ago
1
Different results for RAD51D depending on whether we select hg19 or hg38, even though there are no differences in the numbering

#41 AndreaHAPS closed 1 year ago
1
Can I search the API using the command line?

#40 Manuel-DominguezCBG closed 1 year ago
1
"ERROR: <class 'KeyError'>: '3 not in hg19.fa.'"

#39 Manuel-DominguezCBG closed 1 year ago
5
[Errno 2] No such file or directory: './annotations/gencode.v43lift37.annotation.txt.gz'

#38 Manuel-DominguezCBG closed 1 year ago
4
[WARNING] Worker with pid 5468 was terminated due to signal 4

#37 Manuel-DominguezCBG closed 1 year ago
4
Retire the use of precomputed scores

#36 bw2 closed 1 year ago
0
Max distance = 50 does't show the transcripts ID info

#35 Manuel-DominguezCBG closed 1 year ago
2
Pangolin ERROR: Pangolin was unable to compute scores for this variant

#34 ghost closed 1 year ago
5
Site not working properly

#33 NM-G08 closed 1 year ago
1
Pangolin Mask Param Bugfix

#32 kazmiekr closed 1 year ago
1
Differing predictions for same sequence

#31 NM-G08 closed 10 months ago
7
Feature Request - Predictions for cryptic sites with no difference in score between ref and alt alleles

#30 NM-G08 closed 11 months ago
11