Prepare a concatenated reference

broadinstitute / StrainGE

strain-level analysis tools

BSD 3-Clause "New" or "Revised" License

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Closed Ahmedbargheet closed 2 years ago

Ahmedbargheet commented 2 years ago

Hi,

I am running straingr Prepare a concatenated reference

I got the following error

FileNotFoundError: [Errno 2] No such file or directory: 'nucmer': 'nucmer'

Could you please help me with that?

lrvdijk commented 2 years ago

StrainGE depends on the tool mummer, which can be installed through bioconda (package: mummer4).