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broadinstitute / StrainGE

strain-level analysis tools
BSD 3-Clause "New" or "Revised" License
33 stars 10 forks source link

Installation error with incompatible scipy version #34

Open parul-sharma opened 1 year ago

parul-sharma commented 1 year ago

Both conda and manual installation installed scipy version1.18.1 which causes a compatibility issue leading to an Importerror with scipy.stats I was able to resolve the error with downgrading scipy version to 1.10. But it would be really helpful to include the tested versions of all dependencies in the yaml file in case such incompatibilities occur with any other packages.

lrvdijk commented 1 year ago

The version on PyPI should work with newer SciPy versions, I'm working on an updated conda package!