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broadinstitute / SynerClust

source code for SynerClust
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AttributeError: 'Graph' object has no attribute 'edge' #14

Open tstraub89 opened 4 years ago

tstraub89 commented 4 years ago

I get this error when starting to run SynerClust. It then fails and exits. Traceback (most recent call last): File "/gsap/garage-bacterial/Users/Tim/SynerClust/bin/synerclust.py", line 197, in <module> main() File "/gsap/garage-bacterial/Users/Tim/SynerClust/bin/synerclust.py", line 107, in main myTree.rootTree(root_edge) File "/gsap/garage-bacterial/Users/Tim/SynerClust/bin/TreeLib.py", line 193, in rootTree re_weight = (self.tree.edge[root_edge[0]][root_edge[1]]['weight']) / 2.0 AttributeError: 'Graph' object has no attribute 'edge'

tstraub89 commented 4 years ago

I believe I have traced this error to a version of NetworkX package that is not supported. Perhaps we could add a warning that the package in your environment is not supported, rather than this cryptic error.