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broadinstitute / adapt

A package for designing activity-informed nucleic acid diagnostics for viruses.
MIT License
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Add tool to analyze coverage of a design #11

Closed haydenm closed 5 years ago

haydenm commented 5 years ago

This adds the coverage_analysis module and the analyze_coverage.py executable that uses this module. These analyze the coverage of a design against a given set of input sequences.

For example, these make it possible to produce a design against one set of sequences (using design.py), and then compute the coverage that it achieves against a separate set of sequences (using analyze_coverage.py).