broadinstitute / adapt

A package for designing activity-informed nucleic acid diagnostics for viruses.
MIT License
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Simplify making specific designs for a single taxon #22

Closed haydenm closed 4 years ago

haydenm commented 4 years ago

This makes it easier to use the auto-from-args input option for a single taxon while producing specific designs. It replaces the --specific-against argument, which required aligned sequences, with --specific-against-fastas and --specific-against-taxa. The former accepts unaligned sequences directly and the latter accepts NCBI taxonomic IDs.