Closed haydenm closed 3 years ago
When no guides can be found in a window, the log is at the warning level: https://github.com/broadinstitute/adapt/blob/61dc61c0862231ce7a87be6e2eeeb30680e951f7/adapt/guide_search.py#L1836
But this can occur in many windows even without being a cause for concern (e.g., high indels, too much ambiguity, too much nucleotide diversity). It should probably be at the debug rather than warn level.
When no guides can be found in a window, the log is at the warning level: https://github.com/broadinstitute/adapt/blob/61dc61c0862231ce7a87be6e2eeeb30680e951f7/adapt/guide_search.py#L1836
But this can occur in many windows even without being a cause for concern (e.g., high indels, too much ambiguity, too much nucleotide diversity). It should probably be at the debug rather than warn level.