This adds an argument to analyze_coverage.py,
--write-mean-activity-of-guides, which writes to a file the mean
activity of a guide set across the targets. The PR also adds the
functionality in coverage_analysis.py to compute these values.
Note that the mean activity excludes primers -- i.e., it only
considers guides and does not account for whether the primers in a
design would amplify the target sequence. This is accounted for,
however, by the output of --write-frac-bound.
This adds an argument to analyze_coverage.py,
--write-mean-activity-of-guides, which writes to a file the mean activity of a guide set across the targets. The PR also adds the functionality in coverage_analysis.py to compute these values.Note that the mean activity excludes primers -- i.e., it only considers guides and does not account for whether the primers in a design would amplify the target sequence. This is accounted for, however, by the output of
--write-frac-bound.