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broadinstitute / adapt

A package for designing activity-informed nucleic acid diagnostics for viruses.
MIT License
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Add thermodynamic models for primers and allow assays to be analyzed with this model #68

Closed priyappillai closed 2 years ago

codecov[bot] commented 2 years ago

Codecov Report

Merging #68 (61f94d3) into main (43ae286) will increase coverage by 0.55%. The diff coverage is 94.94%.

@@            Coverage Diff             @@
##             main      #68      +/-   ##
==========================================
+ Coverage   86.74%   87.30%   +0.55%     
==========================================
  Files          52       56       +4     
  Lines        8708     9765    +1057     
==========================================
+ Hits         7554     8525     +971     
- Misses       1154     1240      +86
Impacted Files Coverage Δ
adapt/utils/lsh.py 98.02% <ø> (ø)
adapt/utils/mutate.py 92.30% <ø> (ø)
adapt/utils/search.py 87.48% <ø> (ø)
adapt/utils/year_cover.py 94.59% <ø> (ø)
adapt/utils/seq_io.py 35.77% <22.22%> (ø)
adapt/utils/thermo.py 80.92% <80.92%> (ø)
adapt/utils/predict_activity.py 90.27% <87.50%> (-1.11%) :arrow_down:
adapt/coverage_analysis.py 94.88% <89.68%> (-2.29%) :arrow_down:
bin/analyze_coverage.py 92.11% <89.69%> (-1.03%) :arrow_down:
adapt/alignment.py 95.53% <90.90%> (-0.41%) :arrow_down:
... and 19 more

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