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broadinstitute
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barclay
Command line argument parser and online documentation generation utilities for java command line programs.
BSD 3-Clause "New" or "Revised" License
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Confusing error messages when `@BetaFeature` and `@ExperimentalFeature` both used on the same Class.
#200
jonn-smith
opened
5 months ago
1
adding a null check to avoid NPE in picard
#199
lbergelson
opened
9 months ago
1
lb update to 21
#198
lbergelson
opened
9 months ago
2
Merging duplicate implementations of isConcrete
#197
lbergelson
closed
9 months ago
0
Replacing the gradle java plugin with java-library
#196
lbergelson
closed
9 months ago
3
Update gradle to 8.5
#195
lbergelson
closed
9 months ago
0
Adding new style versions to special arguments
#194
lbergelson
opened
1 year ago
2
Fix file leak in ClassFinder
#193
lbergelson
closed
1 year ago
0
Migrate to Github Actions
#192
lbergelson
closed
1 year ago
0
Fix pom attributes, update readme to reflect new dependencies.
#191
cmnbroad
closed
1 year ago
0
Fix reversed logic in the help template.
#190
cmnbroad
closed
1 year ago
1
Feature request: render Javadoc value tag correctly.
#189
samuelklee
opened
1 year ago
2
Upgrade to Java 17 and gradle 7.4.2.
#188
cmnbroad
closed
1 year ago
2
Add @DeprecatedFeature annotation.
#187
cmnbroad
closed
1 year ago
6
Upgrade to gradle 7.4.2.
#186
cmnbroad
closed
1 year ago
2
[Debian] Switching to OpenJDK 17: issues
#185
pgrt
opened
2 years ago
3
[Debian] four flaky tests in version 4.0.1
#184
pgrt
opened
2 years ago
2
Fix repeated "Possible values" in help output
#183
lbergelson
closed
2 years ago
1
Repeated "Possible Values{" in help output.
#182
lbergelson
closed
2 years ago
0
Feature Request: parse shell quotes in an arguments file
#181
GATKSupportTeam
opened
2 years ago
4
Upgrade log4j to 2.17.1.
#180
cmnbroad
closed
2 years ago
0
Upgrade log4j to 2.17.
#179
cmnbroad
closed
2 years ago
1
Upgrade log4j to 2.15.0 - CVE-2021-44228
#178
rhowe
closed
2 years ago
1
Validating codecov script
#177
lbergelson
opened
3 years ago
1
Update our artifactory password
#176
lbergelson
closed
3 years ago
1
Change WDLGen default for localizationOptional to true.
#175
cmnbroad
closed
3 years ago
3
Deduplicate argument names in help when fullname = shortname
#174
lbergelson
closed
3 years ago
1
Barlcay parser doesn't include positional args in the usage string
#173
cmnbroad
opened
4 years ago
0
Fix command line data type display to not use an embedded colon.
#172
cmnbroad
closed
4 years ago
1
Backport new WDL test cases from GATK.
#171
cmnbroad
closed
4 years ago
1
Update LinkedHashMap iteration in WDL template.
#170
cmnbroad
closed
4 years ago
1
Fix mutable HelpDoclet member declarations.
#169
cmnbroad
closed
4 years ago
1
Question about iterating LinkedHashMap in Freemarker
#168
pgrt
closed
4 years ago
2
Update test output for a test that was added in the previous branch that was merged.
#167
cmnbroad
closed
4 years ago
2
Ability to construct a file from a URI
#166
markjschreiber
closed
4 years ago
5
WDL generation updates
#165
cmnbroad
closed
4 years ago
2
Filter non-CLPs from inclusion in tab completion.
#164
cmnbroad
closed
4 years ago
1
Option prefix should not be included in the freemarker map
#163
cmnbroad
opened
4 years ago
0
WDL Generation.
#162
cmnbroad
closed
4 years ago
3
*Warn on file expansion for files with strings and leading '@'.
#161
cmnbroad
closed
4 years ago
1
*Generate doc for options that are collections of enums.
#160
cmnbroad
closed
4 years ago
3
*Allow processPositionalArguments to be overridden in docgen subclasses.
#159
cmnbroad
closed
4 years ago
2
*Add command line parser tests for EnumSet arguments.
#158
cmnbroad
closed
4 years ago
3
*Fix message construction logic for out-of-range error.
#157
cmnbroad
closed
4 years ago
1
Fix error reporting for null argument collections.
#156
cmnbroad
closed
4 years ago
1
Late failure on a argument collection field with no initialization value (therefore null) v
#155
vruano
closed
4 years ago
1
Add a way to define an "argset" as a named collection of default argument values
#154
cmnbroad
opened
5 years ago
0
Make arguments_file expansion Path aware
#153
cmnbroad
opened
5 years ago
0
DO NOT MERGE: tagNameAndAttributesAreEqual for use by TaggedArgument implementations.
#152
cmnbroad
opened
5 years ago
1
TaggedArgument comparison method for use by TaggedArgument implementations
#151
cmnbroad
closed
5 years ago
1
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