Fix bugs in edge cases handling small input

broadinstitute / catch

A package for designing compact and comprehensive capture probe sets.

MIT License

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Fix bugs in edge cases handling small input #47

Closed haydenm closed 2 years ago

haydenm commented 2 years ago

This makes several fixes to bugs that had caused CATCH to crash in edge cases:

When clustering sequences using the hierarchical method and there is just 1 input sequence. See 00369e6
When solving a set cover instance on a cluster/grouping that has no candidate probes (e.g., a short sequence with a string of Ns). See f96817b

coveralls commented 2 years ago

Coverage increased (+0.01%) to 94.283% when pulling f96817bfd10654117ee63e299374272fb4cf02ec on fix-edge-case-bugs into 624d31a96e6df26a64582fd257bc8762f77e1213 on master.