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broadinstitute / catch

A package for designing compact and comprehensive capture probe sets.
MIT License
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usage of pool.py #59

Open higx360 opened 4 months ago

higx360 commented 4 months ago

I need to use pool.py, but I am unable to generate INPUT_TSV upon using design.py and design_large.py. kindly guide through the process how to generate INPUT_TSV

haydenm commented 4 months ago

Unfortunately we don't provide a tool, in CATCH, for generating that file. What you can do, and what we have done, is to write a small shell script that runs design.py over a grid of parameters (its stdout will be the number of probes) and use that to construct a TSV file in a format similar to the one in the example that we give.